Bilal Kabas

Medical image reconstruction from undersampled acquisitions is an ill-posed problem that involves inversion of the imaging operator linking measurement and image domains. In recent years, physics-driven (PD) models have gained prominence in learning-based reconstruction given their enhanced balance between efficiency and performance. For reconstruction, PD models cascade data-consistency modules that enforce fidelity to acquired data based on the imaging operator, with network modules that process feature maps to alleviate image artifacts due to undersampling. Success in artifact suppression inevitably depends on the ability of the network modules to tease apart artifacts from underlying tissue structures, both of which can manifest contextual relations over broad spatial scales. Convolutional modules that excel at capturing local correlations are relatively insensitive to non-local context. While transformers promise elevated sensitivity to non-local context, practical implementations often suffer from a suboptimal trade-off between local and non-local sensitivity due to intrinsic model complexity. Here, we introduce a novel physics-driven autoregressive state space model (MambaRoll) for enhanced fidelity in medical image reconstruction. In each cascade of an unrolled architecture, MambaRoll employs an autoregressive framework based on physics-driven state space modules (PSSM), where PSSMs efficiently aggregate contextual features at a given spatial scale while maintaining fidelity to acquired data, and autoregressive prediction of next-scale feature maps from earlier spatial scales enhance capture of multi-scale contextual features. Demonstrations on accelerated MRI and sparse-view CT reconstructions indicate that MambaRoll outperforms state-of-the-art PD methods based on convolutional, transformer and conventional SSM modules.

In recent years, deep learning models comprising transformer components have pushed the performance envelope in medical image synthesis tasks. Contrary to convolutional neural networks (CNNs) that use static, local filters, transformers use self-attention mechanisms to permit adaptive, non-local filtering to sensitively capture long-range context. However, this sensitivity comes at the expense of substantial model complexity, which can compromise learning efficacy particularly on relatively modest-sized imaging datasets. Here, we propose a novel adversarial model for multi-modal medical image synthesis, I2I-Mamba, that leverages selective state space modeling (SSM) to efficiently capture long-range context while maintaining local precision. To do this, I2I-Mamba injects channel-mixed Mamba (cmMamba) blocks in the bottleneck of a convolutional backbone. In cmMamba blocks, SSM layers are used to learn context across the spatial dimension and channel-mixing layers are used to learn context across the channel dimension of feature maps. Comprehensive demonstrations are reported for imputing missing images in multi-contrast MRI and MRI-CT protocols. Our results indicate that I2I-Mamba offers superior performance against state-of-the-art CNN- and transformer-based methods in synthesizing target-modality images.

Denoising diffusion models (DDM) have gained recent traction in medical image translation given improved training stability over adversarial models. DDMs learn a multi-step denoising transformation to progressively map random Gaussian-noise images onto target-modality images, while receiving stationary guidance from source-modality images. As this denoising transformation diverges significantly from the task-relevant source-to-target transformation, DDMs can suffer from weak source-modality guidance. Here, we propose a novel self-consistent recursive diffusion bridge (SelfRDB) for improved performance in medical image translation. Unlike DDMs, SelfRDB employs a novel forward process with start- and end-points defined based on target and source images, respectively. Intermediate image samples across the process are expressed via a normal distribution with mean taken as a convex combination of start-end points, and variance from additive noise. Unlike regular diffusion bridges that prescribe zero variance at start-end points and high variance at mid-point of the process, we propose a novel noise scheduling with monotonically increasing variance towards the end-point in order to boost generalization performance and facilitate information transfer between the two modalities. To further enhance sampling accuracy in each reverse step, we propose a novel sampling procedure where the network recursively generates a transient-estimate of the target image until convergence onto a self-consistent solution. Comprehensive analyses in multi-contrast MRI and MRI-CT translation indicate that SelfRDB offers superior performance against competing methods.

In this paper, a computer vision-based navigation system is proposed for autonomous unmanned aerial vehicles (UAV). The proposed navigation system is based on a deep reinforcement learning-based high-level controller. In this paper, proximal policy optimization (PPO), which is a deep reinforcement learning method, is used to train the artificial neural network in an end-to-end way using a continuous reward function. The proposed method has been tested on images obtained from different modalities (RGB and depth) in simulation environments that are created using Unreal Engine and Microsoft AirSim. For the navigation problem that this work is concerned with, a success rate of 96% has been obtained by using RGB cameras. Since RGB cameras are lighter than depth cameras and the trained artificial neural network has a parameter number less than 170.000, the proposed method is suitable to be deployed in micro aerial vehicles.